Method qualification and application of diffusion interaction parameter and virial coefficient

Shuai Shi*, Makiko Uchida, Jason Cheung, Valentyn Antochshuk, Mohammed Shameem

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

21 Scopus citations

Abstract

This research focused on evaluation and application of two methods in studying weak protein-protein interactions, i.e. diffusion interaction parameter (KD) and second virial coefficient (B22), both of which are first-order coefficients of protein interactions. Although the plate-based KD method successfully distinguished KD values with relatively large difference in a pH ranging study, it failed to make a consistent statistical decision to determine close interactions as shown by the comprehensive ANOVA analysis. We also validated the DLS-based B22 method by using a model protein lysozyme. The dramatic change of solution appearance for lysozyme as a function of NaCl concentration highlighted the importance of B22 in understanding protein interactions. Moreover, B22 measurement for a MAb fragment suggested a more repulsive protein interaction in histidine buffer than in citrate buffer. The coefficient of variation was <10% when B22 was on an order of magnitude of 10-4Lmmol/g2 in contrast to >30% when it approached 10-5Lmmol/g2. In this research, we also made an attempt to study protein-protein interactions in concentrated MAb fragment solutions (e.g. >50mg/mL). Our data suggested that such interactions could be empirically modeled by high-order virial expansions.

Original languageEnglish
Pages (from-to)487-493
Number of pages7
JournalInternational Journal of Biological Macromolecules
Volume62
DOIs
StatePublished - Nov 2013
Externally publishedYes

Keywords

  • ANOVA
  • Diffusion interaction parameter
  • Protein-protein interaction
  • Variability
  • Virial coefficient

ASJC Scopus subject areas

  • Structural Biology
  • Biochemistry
  • Molecular Biology

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