TY - JOUR
T1 - Experimental and theoretical studies of pyrazole-4-carbaldehyde derivatives by X-ray crystallography, DFT, molecular docking, and molecular dynamics simulation
AU - Abdulaziz, Fahad
AU - Jamal, Asif
AU - Faizi, Md Serajul Haque
AU - Peedikakkal, Abdul Malik P.
AU - Hussain, Afzal
AU - Al-Busaidi, Idris Juma
AU - Dege, Necmi
AU - Alenezi, Khalaf M.
AU - Haque, Ashanul
N1 - Publisher Copyright:
© 2024 Elsevier B.V.
PY - 2025/2/5
Y1 - 2025/2/5
N2 - Nitrogen-containing heterocycles play a crucial role in drug design and discovery. Pyrazole derivatives have garnered attention due to their unique and intriguing features. This study investigates the structure and properties of two pyrazole-4-carbaldehyde derivatives (3 and 4). We report the single crystal structure of one of the intermediate compounds, 1-(1-(4-bromophenyl)ethylidene)-2-(2-chlorophenyl)hydrazine (2), and a final compound, 1-(2-chlorophenyl)-3-phenyl-1H-pyrazole-4-carbaldehyde (3). We analysed the non-covalent interactions within the crystal using Hirshfeld surface analysis and 2D fingerprint plots. We also used density functional theory (DFT) at the B3LYP/6–311G(d,p) level to optimise the structures and understand electronic properties, transitions and vibrational frequencies. To predict the anti-inflammatory potentials and selectivity of 3 and 4, molecular docking and molecular dynamics (MD) simulation studies against COX1 (PDB ID: 1EQG) and COX2 (PDB ID: 1CX2) receptors were conducted. Overall, this study sheds light on the structural, chemical, and biochemical features of two pyrazole-4-carbaldehyde derivatives.
AB - Nitrogen-containing heterocycles play a crucial role in drug design and discovery. Pyrazole derivatives have garnered attention due to their unique and intriguing features. This study investigates the structure and properties of two pyrazole-4-carbaldehyde derivatives (3 and 4). We report the single crystal structure of one of the intermediate compounds, 1-(1-(4-bromophenyl)ethylidene)-2-(2-chlorophenyl)hydrazine (2), and a final compound, 1-(2-chlorophenyl)-3-phenyl-1H-pyrazole-4-carbaldehyde (3). We analysed the non-covalent interactions within the crystal using Hirshfeld surface analysis and 2D fingerprint plots. We also used density functional theory (DFT) at the B3LYP/6–311G(d,p) level to optimise the structures and understand electronic properties, transitions and vibrational frequencies. To predict the anti-inflammatory potentials and selectivity of 3 and 4, molecular docking and molecular dynamics (MD) simulation studies against COX1 (PDB ID: 1EQG) and COX2 (PDB ID: 1CX2) receptors were conducted. Overall, this study sheds light on the structural, chemical, and biochemical features of two pyrazole-4-carbaldehyde derivatives.
KW - Characterisation
KW - DFT
KW - Hirschfeld surface analysis
KW - MD simulation
KW - Molecular docking
KW - Pyrazole-4-carbaldehyde
KW - X-ray
UR - http://www.scopus.com/inward/record.url?scp=85203011627&partnerID=8YFLogxK
U2 - 10.1016/j.molstruc.2024.139796
DO - 10.1016/j.molstruc.2024.139796
M3 - Article
AN - SCOPUS:85203011627
SN - 0022-2860
VL - 1321
JO - Journal of Molecular Structure
JF - Journal of Molecular Structure
M1 - 139796
ER -