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Computational investigation of solvent interaction (TD-DFT, MEP, HOMO-LUMO), wavefunction studies and molecular docking studies of 3-(1-(3-(5-((1-methylpiperidin-4-yl)methoxy)pyrimidin-2-yl)benzyl)-6-oxo-1,6-dihydropyridazin-3-yl)benzonitrile

  • S. Kanchana
  • , T. Kaviya
  • , P. Rajkumar*
  • , M. Dhinesh Kumar
  • , N. Elangovan*
  • , S. Sowrirajan
  • *Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

66 Scopus citations

Abstract

Initially, we have done the conformational analysis, total of 564 confirmations were available, we noted highest energy value is 56.499 and the ring energy is 67.982. After getting conformational analysis results, we choose the highest energy value structure, that structure is only used for further DFT calculations. The B3LYP/cc-pVDZ basis set was used to optimize the best results for the 3-(1-(3-(5-((1-methyl piperidin-4-yl) methoxy)pyrimidin-2-yl) benzyl)-6-oxo-1,6 -dihydropyridazin -3-yl)benzonitrile (CD). The NBO analysis confirms the highest stabilization energy 39.53 kcal/mol, from bonding LP (1) - N22 to anti-bonding π*(N21 - C24). The ELF, LOL, ALIE, and RDG, analysis was done by using Multiwfn software and confirmed the localization and delocalization of electrons. The thermodynamic properties and electron density were calculated with the help of Gaussian-16w software. Analyses of NLO parameters, MEP, UV-vis, and HOMO-LUMO were performed using five different solvents (chloroform, water, acetonitrile, ethanol, and DMSO). The docking study was done using Autodock software, and we identify the protein-ligand interaction, the best binding score is -5.69 kcal/mol.

Original languageEnglish
Article number100263
JournalChemical Physics Impact
Volume7
DOIs
StatePublished - Dec 2023

Bibliographical note

Publisher Copyright:
© 2023 The Author(s)

Keywords

  • Computational (DFT)
  • Docking
  • NBO
  • Solvents effect
  • Topological analysis

ASJC Scopus subject areas

  • Electronic, Optical and Magnetic Materials
  • Biophysics
  • Atomic and Molecular Physics, and Optics
  • Biochemistry
  • Materials Science (miscellaneous)
  • Condensed Matter Physics
  • Physics and Astronomy (miscellaneous)
  • Physical and Theoretical Chemistry

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