Building a biomedical ontology for chronic liver disease

Kanwal Wahab; Usman Qamar; Khawaja Sarmad Arif; Usman Ali

doi:10.1109/CITS.2019.8862104

Building a biomedical ontology for chronic liver disease

Kanwal Wahab, Usman Qamar, Khawaja Sarmad Arif, Usman Ali

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

5 Scopus citations

Abstract

This research aims for the creation of a core biomedical ontology for chronic liver disease using UMLS as data source. As users cannot work on the accessible information by themselves due to unstructured format of biomedical data and literature, ontologies helps to create structure for the existing information. Resource description framework (RDF) is used in protégé tool for creation of schemas and on the basis of these schemas ontology is developed to describe the concepts and their respective relations within chronic liver disease. It is further evaluated by domain experts.

Original language	English
Title of host publication	CITS 2019 - Proceeding of the 2019 International Conference on Computer, Information and Telecommunication Systems
Editors	Mohammad S. Obaidat, Zhenqiang Mi, Kuei-Fang Hsiao, Petros Nicopolitidis, Daniel Cascado-Caballero
Publisher	Institute of Electrical and Electronics Engineers Inc.
ISBN (Electronic)	9781538640883
DOIs	https://doi.org/10.1109/CITS.2019.8862104
State	Published - Aug 2019
Externally published	Yes
Event	2019 International Conference on Computer, Information and Telecommunication Systems, CITS 2019 - Beijing, China Duration: 28 Aug 2019 → 31 Aug 2019

Publication series

Name	CITS 2019 - Proceeding of the 2019 International Conference on Computer, Information and Telecommunication Systems

Conference

Conference	2019 International Conference on Computer, Information and Telecommunication Systems, CITS 2019
Country/Territory	China
City	Beijing
Period	28/08/19 → 31/08/19

Bibliographical note

Publisher Copyright:
© 2019 IEEE.

Keywords

Chronic Liver Disease
Ontology
Protégé
RDF
UMLS

ASJC Scopus subject areas

Computer Vision and Pattern Recognition
Information Systems
Information Systems and Management
Safety, Risk, Reliability and Quality
Computer Networks and Communications
Hardware and Architecture

Access to Document

10.1109/CITS.2019.8862104

Cite this

Wahab, K., Qamar, U., Arif, K. S., & Ali, U. (2019). Building a biomedical ontology for chronic liver disease. In M. S. Obaidat, Z. Mi, K.-F. Hsiao, P. Nicopolitidis, & D. Cascado-Caballero (Eds.), CITS 2019 - Proceeding of the 2019 International Conference on Computer, Information and Telecommunication Systems Article 8862104 (CITS 2019 - Proceeding of the 2019 International Conference on Computer, Information and Telecommunication Systems). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/CITS.2019.8862104

Wahab, Kanwal ; Qamar, Usman ; Arif, Khawaja Sarmad et al. / Building a biomedical ontology for chronic liver disease. CITS 2019 - Proceeding of the 2019 International Conference on Computer, Information and Telecommunication Systems. editor / Mohammad S. Obaidat ; Zhenqiang Mi ; Kuei-Fang Hsiao ; Petros Nicopolitidis ; Daniel Cascado-Caballero. Institute of Electrical and Electronics Engineers Inc., 2019. (CITS 2019 - Proceeding of the 2019 International Conference on Computer, Information and Telecommunication Systems).

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abstract = "This research aims for the creation of a core biomedical ontology for chronic liver disease using UMLS as data source. As users cannot work on the accessible information by themselves due to unstructured format of biomedical data and literature, ontologies helps to create structure for the existing information. Resource description framework (RDF) is used in prot{\'e}g{\'e} tool for creation of schemas and on the basis of these schemas ontology is developed to describe the concepts and their respective relations within chronic liver disease. It is further evaluated by domain experts.",

keywords = "Chronic Liver Disease, Ontology, Prot{\'e}g{\'e}, RDF, UMLS",

author = "Kanwal Wahab and Usman Qamar and Arif, \{Khawaja Sarmad\} and Usman Ali",

note = "Publisher Copyright: {\textcopyright} 2019 IEEE.; 2019 International Conference on Computer, Information and Telecommunication Systems, CITS 2019 ; Conference date: 28-08-2019 Through 31-08-2019",

year = "2019",

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doi = "10.1109/CITS.2019.8862104",

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series = "CITS 2019 - Proceeding of the 2019 International Conference on Computer, Information and Telecommunication Systems",

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Wahab, K, Qamar, U, Arif, KS & Ali, U 2019, Building a biomedical ontology for chronic liver disease. in MS Obaidat, Z Mi, K-F Hsiao, P Nicopolitidis & D Cascado-Caballero (eds), CITS 2019 - Proceeding of the 2019 International Conference on Computer, Information and Telecommunication Systems., 8862104, CITS 2019 - Proceeding of the 2019 International Conference on Computer, Information and Telecommunication Systems, Institute of Electrical and Electronics Engineers Inc., 2019 International Conference on Computer, Information and Telecommunication Systems, CITS 2019, Beijing, China, 28/08/19. https://doi.org/10.1109/CITS.2019.8862104

Building a biomedical ontology for chronic liver disease. / Wahab, Kanwal; Qamar, Usman; Arif, Khawaja Sarmad et al.
CITS 2019 - Proceeding of the 2019 International Conference on Computer, Information and Telecommunication Systems. ed. / Mohammad S. Obaidat; Zhenqiang Mi; Kuei-Fang Hsiao; Petros Nicopolitidis; Daniel Cascado-Caballero. Institute of Electrical and Electronics Engineers Inc., 2019. 8862104 (CITS 2019 - Proceeding of the 2019 International Conference on Computer, Information and Telecommunication Systems).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

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N2 - This research aims for the creation of a core biomedical ontology for chronic liver disease using UMLS as data source. As users cannot work on the accessible information by themselves due to unstructured format of biomedical data and literature, ontologies helps to create structure for the existing information. Resource description framework (RDF) is used in protégé tool for creation of schemas and on the basis of these schemas ontology is developed to describe the concepts and their respective relations within chronic liver disease. It is further evaluated by domain experts.

AB - This research aims for the creation of a core biomedical ontology for chronic liver disease using UMLS as data source. As users cannot work on the accessible information by themselves due to unstructured format of biomedical data and literature, ontologies helps to create structure for the existing information. Resource description framework (RDF) is used in protégé tool for creation of schemas and on the basis of these schemas ontology is developed to describe the concepts and their respective relations within chronic liver disease. It is further evaluated by domain experts.

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KW - Protégé

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KW - UMLS

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M3 - Conference contribution

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PB - Institute of Electrical and Electronics Engineers Inc.

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Wahab K, Qamar U, Arif KS, Ali U. Building a biomedical ontology for chronic liver disease. In Obaidat MS, Mi Z, Hsiao KF, Nicopolitidis P, Cascado-Caballero D, editors, CITS 2019 - Proceeding of the 2019 International Conference on Computer, Information and Telecommunication Systems. Institute of Electrical and Electronics Engineers Inc. 2019. 8862104. (CITS 2019 - Proceeding of the 2019 International Conference on Computer, Information and Telecommunication Systems). doi: 10.1109/CITS.2019.8862104

Building a biomedical ontology for chronic liver disease

Abstract

Publication series

Conference

Bibliographical note

Keywords

ASJC Scopus subject areas

Access to Document

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Cite this